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2018-03-03gnu: Add ruby-mocha-on-bacon.Christopher Baines
* gnu/packages/ruby.scm (ruby-mocha-on-bacon): New variable.
2018-03-03gnu: networking: Add czmq.Christopher Baines
* gnu/packages/networking.scm (czmq): New variable.
2018-03-03gnu: ghc-refact: Fix typo in description.Tobias Geerinckx-Rice
* gnu/packages/haskell.scm (ghc-refact)[description]: Fix typo.
2018-03-03gnu: quagga: Update to 1.2.4.Tobias Geerinckx-Rice
* gnu/packages/networking.scm (quagga): Update to 1.2.4.
2018-03-03gnu: conky: Remove redundant MKDIR-P.Tobias Geerinckx-Rice
* gnu/packages/conky.scm (conky)[arguments]: Remove redundant MKDIR-P.
2018-03-03gnu: sslh: Update to 1.19c.Tobias Geerinckx-Rice
* gnu/packages/networking.scm (sslh): Update to 1.19c.
2018-03-03gnu: wv: Edit description.Tobias Geerinckx-Rice
Wv is still unmaintained – this just makes it more obvious. * gnu/packages/wv.scm (wv)[description]: Mention the product versions in addition to internal file format ones. Align more closely with the upstream description.
2018-03-03gnu: libseccomp: Update to 2.3.3.Tobias Geerinckx-Rice
* gnu/packages/linux.scm (libseccomp): Update to 2.3.3.
2018-03-03gnu: hdparm: Update to 9.54.Tobias Geerinckx-Rice
* gnu/packages/linux.scm (hdparm): Update to 9.54.
2018-03-03gnu: sdl2: Update to 2.0.8.Tobias Geerinckx-Rice
* gnu/packages/sdl.scm (sdl2): Update to 2.0.8.
2018-03-03gnu: r-httpuv: Update to 1.3.6.2.Ricardo Wurmus
* gnu/packages/web.scm (r-httpuv): Update to 1.3.6.2.
2018-03-03gnu: r-dbi: Update to 0.8.Ricardo Wurmus
* gnu/packages/statistics.scm (r-dbi): Update to 0.8.
2018-03-03gnu: r-performanceanalytics: Update to 1.5.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-performanceanalytics): Update to 1.5.2. [propagated-inputs]: Add r-quadprog. [native-inputs]: Remove gfortran.
2018-03-03linux-initrd: Add virtio modules to '%base-initrd-modules'.Ludovic Courtès
Fixes a regression in installation tests, whereby 'guix system init' would report that virtio modules are missing for the target devices. In practice virtio modules were always available since 'base-initrd' was always called with #:virtio? #t. This commit simply moves them to '%base-initrd-modules' so that 'guix system' knows they're available. Reported by Danny Milosavljevic <dannym@scratchpost.org> at <https://debbugs.gnu.org/cgi/bugreport.cgi?bug=30629#112>. * gnu/system/linux-initrd.scm (default-initrd-modules): Add virtio modules. (base-initrd): Remove #:virtio? and 'virtio-modules'. * gnu/system/vm.scm (expression->derivation-in-linux-vm) (system-qemu-image, virtualized-operating-system): Remove uses of #:virtio?. * doc/guix.texi (Initial RAM Disk): Update 'base-initrd' doc.
2018-03-03system: beaglebone-black: Use 'initrd-modules'.Ludovic Courtès
* gnu/system/examples/beaglebone-black.tmpl: Use 'initrd-modules' instead of 'initrd'.
2018-03-03vm: Add missing modules to the 'expression->derivation-in-linux-vm' initrd.Ludovic Courtès
Fixes a regression introduced in bc499b113a598c0e7863da9887a4133472985713, whereby the default initrd used by 'expression->derivation-in-linux-vm' would lack all the usual modules: virtio, nls_iso8859-1, etc. * gnu/system/vm.scm (expression->derivation-in-linux-vm): Pass #:linux-modules to 'base-initrd'.
2018-03-03linux-initrd: 'file-system-modules' returns the right module list.Ludovic Courtès
Fixes a bug whereby, for an "iso9660" file system, it would return '("iso9660" "isofs"), i.e., both the key and the value. Reported by Danny Milosavljevic <dannym@scratchpost.org> at <https://debbugs.gnu.org/cgi/bugreport.cgi?bug=30629#115>. * gnu/system/linux-initrd.scm (lookup-procedure): 'vhash-assoc' returns a key/value pair; match it.
2018-03-02gnu: cutadapt: Update to 1.16.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (cutadapt): Update to 1.16. [source]: Fetch via git. [arguments]: Remove. [native-inputs]: Replace python-nose with python-pytest.
2018-03-02gnu: python-xopen: Update to 0.3.2.Ricardo Wurmus
* gnu/packages/python.scm (python-xopen): Update to 0.3.2.
2018-03-02gnu: Add r-hpar.Ricardo Wurmus
* gnu/packages/bioconductor.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2018-03-02gnu: Add r-powerplus.Ricardo Wurmus
* gnu/packages/cran.scm (r-powerplus): New variable.
2018-03-02gnu: Add r-np.Ricardo Wurmus
* gnu/packages/cran.scm (r-np): New variable.
2018-03-02gnu: Add r-phontools.Ricardo Wurmus
* gnu/packages/cran.scm (r-phontools): New variable.
2018-03-02gnu: Add r-complexplus.Ricardo Wurmus
* gnu/packages/cran.scm (r-complexplus): New variable.
2018-03-02gnu: Add r-expm.Ricardo Wurmus
* gnu/packages/cran.scm (r-expm): New variable.
2018-03-02gnu: Add r-trend.Ricardo Wurmus
* gnu/packages/cran.scm (r-trend): New variable.
2018-03-02gnu: Add r-cubature.Ricardo Wurmus
* gnu/packages/cran.scm (r-cubature): New variable.
2018-03-02gnu: Add r-urca.Ricardo Wurmus
* gnu/packages/cran.scm (r-urca): New variable.
2018-03-02gnu: Add r-fractal.Ricardo Wurmus
* gnu/packages/cran.scm (r-fractal): New variable.
2018-03-02gnu: Add r-extradistr.Ricardo Wurmus
* gnu/packages/cran.scm (r-extradistr): New variable.
2018-03-02gnu: Add r-tsa.Ricardo Wurmus
* gnu/packages/cran.scm (r-tsa): New variable.
2018-03-02gnu: Add r-wmtsa.Ricardo Wurmus
* gnu/packages/cran.scm (r-wmtsa): New variable.
2018-03-02gnu: Add r-tseries.Ricardo Wurmus
* gnu/packages/cran.scm (r-tseries): New variable.
2018-03-02gnu: Add r-quantmod.Ricardo Wurmus
* gnu/packages/cran.scm (r-quantmod): New variable.
2018-03-02gnu: Add r-sapa.Ricardo Wurmus
* gnu/packages/cran.scm (r-sapa): New variable.
2018-03-02gnu: Add r-ifultools.Ricardo Wurmus
* gnu/packages/cran.scm (r-ifultools): New variable.
2018-03-02gnu: Add r-splus2r.Ricardo Wurmus
* gnu/packages/cran.scm (r-splus2r): New variable.
2018-03-02gnu: Add r-leaps.Ricardo Wurmus
* gnu/packages/cran.scm (r-leaps): New variable.
2018-03-02gnu: Add r-ttr.Ricardo Wurmus
* gnu/packages/cran.scm (r-ttr): New variable.
2018-03-02gnu: Add r-rbiofabric.Ricardo Wurmus
* gnu/packages/graph.scm (r-rbiofabric): New variable.
2018-03-02gnu: Add r-sna.Ricardo Wurmus
* gnu/packages/cran.scm (r-sna): New variable.
2018-03-02gnu: Add r-statnet-common.Ricardo Wurmus
* gnu/packages/cran.scm (r-statnet-common): New variable.
2018-03-02gnu: Add r-network.Ricardo Wurmus
* gnu/packages/cran.scm (r-network): New variable.
2018-03-02gnu: nghttp2: Update to 1.31.0.Tobias Geerinckx-Rice
* gnu/packages/web.scm (nghttp2): Update to 1.31.0.
2018-03-02gnu: libpsl: Update to 0.20.1.Tobias Geerinckx-Rice
* gnu/packages/web.scm (libpsl): Update to 0.20.1.
2018-03-02gnu: zerofree: Update to 1.1.1.Tobias Geerinckx-Rice
* gnu/packages/linux.scm (zerofree): Update to 1.1.1.
2018-03-02gnu: python-webencodings: Fix typo in description.Tobias Geerinckx-Rice
* gnu/packages/python-web.scm (python-webencodings)[description]: Fix typo.
2018-03-02gnu: delta: Remove redundant code.Tobias Geerinckx-Rice
* gnu/packages/debug.scm (delta)[arguments]: Remove unneeded MKDIR-P calls.
2018-03-02gnu: perl-mozilla-ca: Update to 20180117.Tobias Geerinckx-Rice
* gnu/packages/perl.scm (perl-mozilla-ca): Update to 20180117.
2018-03-02gnu: perl-test-harness: Update to 3.41.Tobias Geerinckx-Rice
* gnu/packages/perl-check.scm (perl-test-harness): Update to 3.41.