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2022-12-21gnu: Add vembrane.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (vembrane): New variable.
2022-12-21gnu: python-plastid: Update to 0.6.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-plastid): Update to 0.6.0. [source]: Fetch from git repository. [build-system]: Use pyproject-build-system. [arguments]: Enable tests; add build phases 'unpack-test-data and 'build-extensions. [inputs]: Add openssl. [native-inputs]: Add test data.
2022-12-21gnu: python-pysam: Update to 0.20.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-pysam): Update to 0.20.0. [build-system]: Use pyproject-build-system.
2022-12-21gnu: htslib: Update to 1.16.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (htslib): Update to 1.16.
2022-12-21gnu: pbbam: Use htslib 1.14.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (pbbam)[propagated-inputs]: Replace htslib with htslib-1.14.
2022-12-21gnu: Add htslib-1.14.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (htslib-1.14): New variable.
2022-12-21gnu: Add ocaml5.0-merlin.pukkamustard
* gnu/packages/ocaml.scm (ocaml5.0-merlin): New variable. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2022-12-21gnu: Add ocaml5.0-dot-merlin-reader.pukkamustard
* gnu/packages/ocaml.scm (ocaml5.0-dot-merlin-reader): New variable. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2022-12-21gnu: Add ocaml5.0-merlin-lib.pukkamustard
* gnu/packages/ocaml.scm (ocaml5.0-merlin-lib): New variable. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2022-12-21gnu: Update ocaml-merlin-lib to 4.7-414.pukkamustard
* gnu/packages/ocaml.scm (ocaml-merlin-lib): Update to 4.7-414. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2022-12-21gnu: Add ocaml5.0-eio-main.pukkamustard
* gnu/packages/ocaml.scm (ocaml5.0-eio-main): New variable. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2022-12-21gnu: Add ocaml5.0-eio-linux.pukkamustard
* gnu/packages/ocaml.scm (ocaml5.0-eio-linux): New variable. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2022-12-21gnu: Add ocaml-uring.pukkamustard
* gnu/packages/ocaml.scm (ocaml-uring): New variable. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2022-12-21gnu: Add ocaml5.0-eio-luv.pukkamustard
* gnu/packages/ocaml.scm (ocaml5.0-eio-luv): New variable. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2022-12-21gnu: Add ocaml5.0-eio.pukkamustard
* gnu/packages/ocaml.scm (ocaml5.0-eio): New variable. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2022-12-21gnu: ocaml-mdx: Move inputs to propagated-inputs.pukkamustard
* gnu/packages/ocaml.scm (ocaml-mdx): Move inputs to propagated-inputs. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2022-12-21gnu: Add ocaml-bechamel.pukkamustard
* gnu/packages/ocaml.scm (ocaml-bechamel): New variable. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2022-12-21gnu: Add ocaml5.0-ctypespukkamustard
* gnu/packages/ocaml.scm (ocaml5.0-ctypes): New variable. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2022-12-21gnu: Add ocaml-lwt-dllist.pukkamustard
* gnu/packages/ocaml.scm (ocaml-lwt-dllist): New variable. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2022-12-21gnu: Add ocaml5.0-crowbar.pukkamustard
* gnu/packages/ocaml.scm (ocaml5.0-crowbar): New variable. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2022-12-21gnu: Update ocaml-odoc to 2.2.0.pukkamustard
* gnu/packages/ocaml.scm (ocaml-odoc): Update to 2.2.0. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2022-12-21gnu: Add ocaml5.0-ppx-expect.pukkamustard
* gnu/packages/ocaml.scm (ocaml5.0-ppx-expect): New variable. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2022-12-21gnu: Update ocaml-qcheck to 0.20.pukkamustard
* gnu/packages/ocaml.scm (ocaml-qcheck): Update to 0.20. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2022-12-21gnu: Update ocaml-ppxlib to 0.25.1.pukkamustard
* gnu/packages/ocaml.scm (ocaml-ppxlib): Update to 0.25.1. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2022-12-21gnu: Add ocaml5.0-base.pukkamustard
* gnu/packages/ocaml.scm (ocaml5.0-base): New variable. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2022-12-21gnu: Add ocaml-hmap.pukkamustard
* gnu/packages/ocaml.scm (ocaml-hmap): New variable. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2022-12-21gnu: Add ocaml-optint.pukkamustard
* gnu/packages/ocaml.scm (ocaml-optint): New variable. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2022-12-21gnu: Add ocaml-monolith.pukkamustard
* gnu/packages/ocaml.scm (ocaml-monolith): New variable. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2022-12-21gnu: Add ocaml-psq.pukkamustard
* gnu/packages/ocaml.scm (ocaml-psq): New variable. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2022-12-21gnu: opam: Use OCaml 4.14 compiled version when building OCaml 5.0 packages.pukkamustard
* gnu/packages/ocaml.scm (opam)[properties]: Add ocaml5.0-variant. (opam)[propagated-inputs]: Move to inputs. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2022-12-21guix: ocaml: Add package-with-ocaml5.0.pukkamustard
* guix/build-system/ocaml.scm (package-with-ocaml5.0) (strip-ocaml5.0-variant): New variables. * gnu/packages/ocaml.scm (ocaml5.0-dune-bootstrap) (ocaml5.0-dune, ocaml5.0-dune-configurator) (ocaml5.0-csexp, ocaml5.0-result): New variables. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2022-12-21gnu: Add ocaml5.0-findlibpukkamustard
* gnu/packages/ocaml.scm (ocaml5.0-findlib): New variable. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2022-12-21gnu: ocaml-findlib: Update to 1.9.5.pukkamustard
* gnu/packages/ocaml.scm (ocaml-findlib): Update to 1.9.5. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2022-12-21gnu: Add ocaml-5.0.pukkamustard
* gnu/packages/ocaml.scm (ocaml-5.0): New variable. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2022-12-21guix system: Skip initrd modules check when using --target.Maxim Cournoyer
* guix/scripts/system.scm (perform-action): Do not call CHECK-INITRD-MODULES when the %current-target-system parameter is set.
2022-12-21gnu: julia-imagemetadata: Update to 0.9.8.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-imagemetadata): Update to 0.9.8. [arguments]: Add phase to skip greyscale test. [propagated-inputs]: Remove julia-indirectarrays; add julia-imagebase. [native-inputs]: Add julia-indirectarrays.
2022-12-21gnu: julia-paddedviews: Update to 0.5.11.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-paddedviews): Update to 0.5.11.
2022-12-21gnu: julia-imageaxes: Update to 0.6.10.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-imageaxes): Update to 0.6.10. [arguments]: Add a phase to skip a greyscale test. [propagated-inputs]: Add julia-imagebase. [native-inputs]: Add julia-aqua and julia-documenter.
2022-12-21gnu: julia-graphics: Update to 1.1.2.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-graphics): Update to 1.1.2.
2022-12-21gnu: julia-axisarrays: Update to 0.4.6.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-axisarrays): Update to 0.4.6.
2022-12-21gnu: julia-ellipsisnotation: Update to 1.6.0.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-ellipsisnotation): Update to 1.6.0. [arguments]: Remove phase adjusting the test suite.
2022-12-21gnu: julia-blockbandedmatrices: Update to 0.11.9.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-blockbandedmatrices): Update to 0.11.9.
2022-12-21gnu: julia-bandedmatrices: Update to 0.17.9.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-bandedmatrices): Update to 0.17.9. [propagated-inputs]: Add julia-aqua. [native-inputs]: Add julia-aqua.
2022-12-21gnu: julia-arrayinterface: Update to 5.0.8.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-arrayinterface): Update to 5.0.8. [propagated-inputs]: Remove julia-static; add julia-compat and julia-static-0.6. [native-inputs]: Add julia-static-0.6.
2022-12-21gnu: Add julia-static-0.6.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-static-0.6): New variable.
2022-12-21gnu: julia-matrixfactorizations: Update to 0.9.3.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-matrixfactorizations): Update to 0.9.3. [arguments]: Re-enable one of the skipped tests.
2022-12-21gnu: julia-scanbyte: Limit to x86_64-linux.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-scanbyte)[supported-systems]: New field.
2022-12-21gnu: julia-scanbyte: Update to 0.3.2.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-scanbyte): Update to 0.3.2.
2022-12-21gnu: julia-blockarrays: Update to 0.16.23.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-blockarrays): Update to 0.16.23. [native-inputs]: Remove julia-lazyarrays; add julia-aqua.
2022-12-21gnu: julia-indexablebitvectors: Limit to 64-bit systems.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-indexablebitvectors) [supported-systems]: New field.
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