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2018-03-19gnu: tilda: Update to 1.4.1.Efraim Flashner
* gnu/packages/terminals.scm (tilda): Update to 1.4.1. [arguments]: Rename 'autogen phase to 'bootstrap. Clean up 'bootstrap phase.
2018-03-19gnu: pigx-chipseq: Update to 0.0.8.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (pigx-chipseq): Update to 0.0.8. [inputs]: Add python-magic, python-xlrd, and trim-galore. [arguments]: Disable tests.
2018-03-19gnu: pigx-scrnaseq: Use pandoc-1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (pigx-scrnaseq)[inputs]: Replace ghc-pandoc with ghc-pandoc-1, and ghc-pandoc-citeproc with ghc-pandoc-citeproc-with-pandoc-1.
2018-03-19gnu: pigx-bsseq: Use pandoc-1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (pigx-bsseq)[inputs]: Replace ghc-pandoc with ghc-pandoc-1, and ghc-pandoc-citeproc with ghc-pandoc-citeproc-with-pandoc-1.
2018-03-19gnu: pigx-chipseq: Use pandoc-1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (pigx-chipseq)[inputs]: Replace ghc-pandoc with ghc-pandoc-1, and ghc-pandoc-citeproc with ghc-pandoc-citeproc-with-pandoc-1.
2018-03-19gnu: pigx-rnaseq: Use pandoc-1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (pigx-rnaseq)[inputs]: Replace ghc-pandoc with ghc-pandoc-1, and ghc-pandoc-citeproc with ghc-pandoc-citeproc-with-pandoc-1.
2018-03-19gnu: Add ghc-pandoc-citeproc-with-pandoc-1.Ricardo Wurmus
* gnu/packages/haskell.scm (ghc-pandoc-citeproc-with-pandoc-1): New variable.
2018-03-19Merge branch 'master' into stagingMarius Bakke
2018-03-18git-download: Fix recursive checkouts.Eric Bavier
* guix/git-download.scm (git-fetch)<build>: Fix match on INPUTS, which may contain package outputs.
2018-03-19gnu: Add r-abbyyr.Vijayalakshmi Vedantham
* gnu/packages/cran.scm (r-abbyyr): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2018-03-18glob: Add an extra glob pattern compilation stage.Ludovic Courtès
* guix/glob.scm (compile-glob-pattern): Rename to... (string->sglob): ... this. (compile-sglob, string->compiled-sglob): New procedures. (glob-match?): Replace '?, 'range, and 'set with a single clause. * tests/glob.scm (test-compile-glob-pattern): Rename to... (test-string->sglob): ... this. Adjust accordingly. (test-glob-match): Use 'string->compiled-sglob' instead of 'compile-glob-pattern'. * gnu/build/linux-modules.scm (read-module-aliases): Use 'string->compiled-sglob' instead of 'compile-glob-pattern'.
2018-03-18glob: Support square brackets in patterns.Ludovic Courtès
* guix/glob.scm (wildcard-indices): Remove. (parse-bracket): New procedure. (compile-glob-pattern): Rewrite. Support square brackets for sets and ranges. (glob-match?): Support sets and ranges. * tests/glob.scm (test-compile-glob-pattern) (test-glob-match): New macros. Use them to rewrite the existing tests, and add new tests.
2018-03-18linux-modules: 'load-linux-module*' honors BLACK-LIST in recursive calls.Ludovic Courtès
* gnu/build/linux-modules.scm (load-linux-module*): Pass BLACK-LIST in recursive call.
2018-03-18linux-modules: Add 'current-kernel-directory'.Ludovic Courtès
* gnu/build/linux-modules.scm (current-kernel-directory): New procedure. (current-alias-file): Use it.
2018-03-18vm: Display a backtrace upon error by default.Ludovic Courtès
* gnu/system/vm.scm (expression->derivation-in-linux-vm): Pass #:on-error to 'base-initrd'.
2018-03-18tests: elpa: Don't actually download files.Ludovic Courtès
* tests/elpa.scm (eval-test-with-elpa): Mock 'url-fetch'.
2018-03-18import: elpa: Return 'license:gpl3+ for ELPA only.Ludovic Courtès
Fixes <https://bugs.gnu.org/30836>. Reported by Konrad Hinsen <konrad.hinsen@fastmail.net>. * guix/import/elpa.scm (elpa-package->sexp): Add LICENSE parameter and honor it. (elpa->guix-package): Pass 'license:gpl3+ only when REPO is 'gnu.
2018-03-18import: elpa: Adjust test for HTTPS URLs.Ludovic Courtès
This is a followup to 44dd3d579db3aa467e41d0b431029e46cae8e12d. * tests/elpa.scm (eval-test-with-elpa): Use https.
2018-03-18gnu: youtube-dl: Update to 2018.03.14.Sohom Bhattacharjee
* gnu/packages/video.scm (youtube-dl): Update to 2018.03.14. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2018-03-18gnu: shotwell: Update to 0.28.0.Christopher Baines
* gnu/packages/gnome.scm (shotwell): Update to 0.28.0.
2018-03-18gnu: Add ruby-ruby-engine.Ben Woodcroft
* gnu/packages/ruby.scm (ruby-ruby-engine): New variable.
2018-03-18gnu: Add ruby-rake.Ben Woodcroft
* gnu/packages/ruby.scm (ruby-rake): New variable.
2018-03-18gnu: Add ruby-erubis.Ben Woodcroft
* gnu/packages/ruby.scm (ruby-erubis): New variable.
2018-03-18gnu: Add ruby-sporkmonger-rack-mount.Ben Woodcroft
* gnu/packages/ruby.scm (ruby-sporkmonger-rack-mount): New variable.
2018-03-18gnu: Add ruby-creole.Ben Woodcroft
* gnu/packages/ruby.scm (ruby-creole): New variable.
2018-03-18gnu: Add ruby-contest.Ben Woodcroft
* gnu/packages/ruby.scm (ruby-contest): New variable.
2018-03-18gnu: Add ruby-rack-protection.Ben Woodcroft
* gnu/packages/ruby.scm (ruby-rack-protection): New variable.
2018-03-18gnu: Add ruby-rack-test.Ben Woodcroft
* gnu/packages/ruby.scm (ruby-rack-test): New variable.
2018-03-18gnu: Add ruby-asciidoctor.Ben Woodcroft
* gnu/packages/ruby.scm (ruby-asciidoctor): New variable.
2018-03-18gnu: Add ruby-asciimath.Ben Woodcroft
* gnu/packages/maths.scm (ruby-asciimath): New variable.
2018-03-17gnu: icecat: Fix CVE-2018-{5146,5147}, etc.Mark H Weaver
Includes fixes for CVE-2018-5146 and CVE-2018-5147. * gnu/packages/gnuzilla.scm (icecat)[source]: Add selected fixes from the upstream mozilla-esr52 repository.
2018-03-18Merge branch 'master' into stagingMarius Bakke
2018-03-17gnu: Add terraform-docs.Christopher Baines
* gnu/packages/terraform.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2018-03-17gnu: Add go-github-com-hashicorp-hcl.Christopher Baines
* gnu/packages/golang.scm (go-github-com-hashicorp-hcl): New variable.
2018-03-17gnu: Add go-github-com-tj-docopt.Christopher Baines
* gnu/packages/golang.scm (go-github-com-tj-docopt): New variable.
2018-03-18git: 'switch-to-ref' accepts short commit IDs.Ludovic Courtès
Fixes <https://bugs.gnu.org/30716>. Reported by Björn Höfling <bjoern.hoefling@bjoernhoefling.de>. * guix/git.scm (switch-to-ref): When REF is a commit, check the length of COMMIT and use 'object-lookup-prefix' if available.
2018-03-18gnu: guile-git: Update to 2bb9fbb.Ludovic Courtès
* gnu/packages/guile.scm (guile-git): Update to 2bb9fbb.
2018-03-18gnu: nss-mdns: Adjust Avahi socket file name.Ludovic Courtès
Fixes <https://bugs.gnu.org/30613>. Regression introduced in 550f4509acf2c0f67882260414b0bb2843e07465. Reported by George myglc2 Clemmer <myglc2@gmail.com>. * gnu/packages/avahi.scm (nss-mdns)[arguments]: Remove #:configure-flags. Add #:phases.
2018-03-18gnu: datamash: Update to 1.3.Ludovic Courtès
* gnu/packages/datamash.scm (datamash): Update to 1.3.
2018-03-18gnu: fvwm: Add '.desktop' file.ng0
* gnu/packages/fvwm.scm (fvwm)[arguments]: Add new phase to create '.desktop' file. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-03-18import: elpa: Fix typos in documentation stringsKonrad Hinsen
* guix/import/elpa.scm: Fix typos in docstrings. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-03-18import: elpa: use https in download URLsKonrad Hinsen
* guix/import/elpa.scm (elpa-url): Use HTTPS. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-03-18services: openssh: Add 'accepted-environment' field.Martin Castillo
* gnu/services/ssh.scm (<openssh-configuration>)[accepted-environment]: New field. (openssh-config-file): Honor 'acccepted-environment'. * doc/guix.texi (Networking Services): Document it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-03-18gnu: java-simple-xml: Fix java8 test failures.Gábor Boskovits
* gnu/packages/patches/javas-simple-xml-fix-tests.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/java.scm (java-simple-xml)[source](patches): Add it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-03-17gnu: shaderc: Clean up package arguments.Efraim Flashner
* gnu/packages/vulkan.scm (shaderc)[version]: Remove extra '-'. [arguments]: Remove extra 'mkdir-p' calls and refer to inputs directly.
2018-03-17Revert "gnu: shaderc: Use more standard keys."Rutger Helling
This reverts commit 9bc0591bc11190ac49c8ea3cf44c4903c924f6c7. This commit broke 'shaderc'.
2018-03-17gnu: Add python-prometheus-client.Christopher Baines
* gnu/packages/monitoring.scm (python-prometheus-client, python2-prometheus-client): New variables.
2018-03-17services: databases: Change quote' to single-quote.Christopher Baines
In the postgresql-config-file gexp compiler. * gnu/services/databases.scm (postgresql-config-file-compiler): Change quote' to single-quote.
2018-03-17gnu: Use the CMake build system's #:build-type key.Tobias Geerinckx-Rice
* gnu/packages/code.scm (rtags)[arguments]: Move the CMAKE_BUILD_TYPE from #:configure-flags to #:build-type. * gnu/packages/databases.scm (apache-arrow)[arguments]: Likewise * gnu/packages/engineering.scm (kicad)[arguments]: Likewise * gnu/packages/flashing-tools.scm (heimdall)[arguments]: Likewise * gnu/packages/graphics.scm (openscenegraph)[arguments]: Likewise * gnu/packages/linux.scm (rdma-core)[arguments]: Likewise * gnu/packages/music.scm (portmidi)[arguments]: Likewise * gnu/packages/photo.scm (rawtherapee)[arguments]: Likewise * gnu/packages/rdesktop.scm (freerdp)[arguments]: Likewise * gnu/packages/serialization.scm (flatbuffers)[arguments]: Likewise * gnu/packages/web.scm (tidy-html)[arguments]: Likewise
2018-03-17gnu: Fix common unquote typos.Tobias Geerinckx-Rice
It's easy to mistype ‘("foo" foo)’ as ‘("foo", foo)’ (which also works). Fix such typos for the proper edification of our young. * gnu/packages/android.scm: Move unquotes to their operands. * gnu/packages/bootloaders.scm: Likewise. * gnu/packages/build-tools.scm: Likewise. * gnu/packages/chemistry.scm: Likewise. * gnu/packages/compression.scm: Likewise. * gnu/packages/connman.scm: Likewise. * gnu/packages/django.scm: Likewise. * gnu/packages/emulators.scm: Likewise. * gnu/packages/engineering.scm: Likewise. * gnu/packages/file-systems.scm: Likewise. * gnu/packages/freedesktop.scm: Likewise. * gnu/packages/games.scm: Likewise. * gnu/packages/gimp.scm: Likewise. * gnu/packages/gl.scm: Likewise. * gnu/packages/gnome.scm: Likewise. * gnu/packages/graphics.scm: Likewise. * gnu/packages/haskell.scm: Likewise. * gnu/packages/irc.scm: Likewise. * gnu/packages/julia.scm: Likewise. * gnu/packages/kde-frameworks.scm: Likewise. * gnu/packages/linux.scm: Likewise. * gnu/packages/lua.scm: Likewise. * gnu/packages/mail.scm: Likewise. * gnu/packages/make-bootstrap.scm: Likewise. * gnu/packages/messaging.scm: Likewise. * gnu/packages/music.scm: Likewise. * gnu/packages/networking.scm: Likewise. * gnu/packages/ocaml.scm: Likewise. * gnu/packages/perl.scm: Likewise. * gnu/packages/python.scm: Likewise. * gnu/packages/python-web.scm: Likewise. * gnu/packages/qt.scm: Likewise. * gnu/packages/ratpoison.scm: Likewise. * gnu/packages/sdl.scm: Likewise. * gnu/packages/sml.scm: Likewise. * gnu/packages/terminals.scm: Likewise. * gnu/packages/text-editors.scm: Likewise. * gnu/packages/video.scm: Likewise. * gnu/packages/virtualization.scm: Likewise. * gnu/packages/vulkan.scm: Likewise. * gnu/packages/wget.scm: Likewise. * gnu/packages/wine.scm: Likewise. * gnu/packages/wm.scm: Likewise. * gnu/packages/xdisorg.scm: Likewise. * gnu/packages/xml.scm: Likewise. * gnu/packages/xorg.scm: Likewise.
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