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2021-09-07gnu: Add r-intergraph.Ricardo Wurmus
* gnu/packages/cran.scm (r-intergraph): New variable.
2021-09-07gnu: Add r-netrep.Ricardo Wurmus
* gnu/packages/cran.scm (r-netrep): New variable.
2021-09-07gnu: Add r-precrec.Ricardo Wurmus
* gnu/packages/cran.scm (r-precrec): New variable.
2021-09-07gnu: Add r-cmplot.Ricardo Wurmus
* gnu/packages/cran.scm (r-cmplot): New variable.
2021-09-07gnu: Add r-nsprcomp.Ricardo Wurmus
* gnu/packages/cran.scm (r-nsprcomp): New variable.
2021-09-07gnu: Add r-biomformat.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biomformat): New variable.
2021-09-07gnu: Add r-biodb.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biodb): New variable.
2021-09-07gnu: Add r-biocdockermanager.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biocdockermanager): New variable.
2021-09-07gnu: Add r-biocthis.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biocthis): New variable.
2021-09-07gnu: Add r-basilisk.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-basilisk): New variable.
2021-09-07gnu: Add r-basilisk-utils.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-basilisk-utils): New variable.
2021-09-07gnu: Add r-dir-expiry.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-dir-expiry): New variable.
2021-09-07gnu: Add r-genetclassifier.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-genetclassifier): New variable.
2021-09-07gnu: Add r-minet.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-minet): New variable.
2021-09-07gnu: Add r-biobtreer.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biobtreer): New variable.
2021-09-07gnu: Add r-bgeedb.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bgeedb): New variable.
2021-09-07gnu: Add r-org-bt-eg-db.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-org-bt-eg-db): New variable.
2021-09-07gnu: Add r-chk.Ricardo Wurmus
* gnu/packages/cran.scm (r-chk): New variable.
2021-09-07gnu: Add r-bgeecall.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bgeecall): New variable.
2021-09-07gnu: Add r-rslurm.Ricardo Wurmus
* gnu/packages/cran.scm (r-rslurm): New variable.
2021-09-07gnu: Add r-beclear.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-beclear): New variable.
2021-09-07gnu: emacs-dap-mode: Update to 0.7.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-dap-mode): Update to 0.7.
2021-09-07gnu: emacs-lsp-mode: Move all client libraries at top-level.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-lsp-mode)[arguments]<#:phases>: Move all client libraries at top-level. <#:emacs>: Use full Emacs for libxml support.
2021-09-07gnu: emacs-lsp-mode: Add clients.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-lsp-mode)[arguments]: Also install LSP-mode clients.
2021-09-07gnu: emacs-lsp-ivy: Update to 0.5.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-lsp-ivy): Update to 0.5.
2021-09-07gnu: emacs-lsp-ui: Update to 8.0.0.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-lsp-ui): Update to 8.0.0.
2021-09-07gnu: emacs-lsp-treemacs: Update to 0.4.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-lsp-treemacs): Update to 0.4.
2021-09-07gnu: emacs-lsp-mode: Update to 8.0.0.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-lsp-mode): Update to 8.0.0.
2021-09-06gnu: Add linux-libre 5.14.1.Leo Famulari
* gnu/packages/linux.scm (linux-libre-5.14-version, deblob-scripts-5.14, linux-libre-5.14-pristine-source, linux-libre-5.14-source, linux-libre-headers-5.14, linux-libre-5.14): New variables. * gnu/packages/aux-files/linux-libre/5.14-arm.conf, gnu/packages/aux-files/linux-libre/5.14-arm64.conf, gnu/packages/aux-files/linux-libre/5.14-i686.conf, gnu/packages/aux-files/linux-libre/5.14-x86_64.conf: New files. * Makefile.am (AUX_FILES): Add them.
2021-09-06gnu: linux-libre 4.4: Update to 4.4.283.Leo Famulari
* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.283. (linux-libre-4.4-gnu-revision): Update to gnu1. (linux-libre-4.4-pristine-source, deblob-scripts-4.4): Update hash.
2021-09-06gnu: linux-libre 4.9: Update to 4.9.282.Leo Famulari
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.282. (linux-libre-4.9-gnu-revision): Update to gnu1. (linux-libre-4.9-pristine-source, deblob-scripts-4.9): Update hashes.
2021-09-06gnu: linux-libre 4.14: Update to 4.14.246.Leo Famulari
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.246. (linux-libre-4.14-gnu-revision): Update to gnu1. (linux-libre-4.14-pristine-source, deblob-scripts-4.14): Update hashes.
2021-09-06gnu: linux-libre 4.19: Update to 4.19.206.Leo Famulari
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.206. (linux-libre-4.19-gnu-revision): Update to gnu1. (linux-libre-4.19-pristine-source, deblob-scripts): Update hashes.
2021-09-06gnu: linux-libre 5.4: Update to 5.4.144.Leo Famulari
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.144. (linux-libre-5.4-gnu-revision): Update to gnu1. (linux-libre-5.4-pristine-source, deblob-scripts-5.4): Update hashes.
2021-09-06gnu: linux-libre 5.10: Update to 5.10.62.Leo Famulari
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.62. (linux-libre-5.10-gnu-revision): Update to gnu1. (linux-libre-5.10-pristine-source, deblob-scripts-5.10): Update hashes.
2021-09-06gnu: linux-libre: Update to 5.13.14.Leo Famulari
* gnu/packages/linux.scm (linux-libre-5.13-version): Update to 5.13.14. (linux-libre-5.13-gnu-revision): Update to gnu1. (linux-libre-5.13-pristine-source, deblob-scripts-5.13): Update hashes.
2021-09-06gnu: linux-libre: Parameterize the revision of the deblob scripts.Leo Famulari
For more information about this: https://lists.gnu.org/archive/html/guix-devel/2021-09/msg00054.html * gnu/packages/linux.scm (linux-libre-5.13-gnu-revision, linux-libre-5.10-gnu-revision, linux-libre-5.4-gnu-revision, linux-libre-4.19-gnu-revision, linux-libre-4.14-gnu-revision, linux-libre-4.9-gnu-revision, linux-libre-4.4-gnu-revision, linux-libre-gnu-revision, linux-libre-lts-gnu-revision): New variables. (linux-libre-deblob-scripts, linux-libre-urls, make-linux-libre-headers, make-linux-libre-headers*, make-linux-libre, make-linux-libre*): Add a gnu-revision argument. (deblob-scripts-5.13, deblob-scripts-5.10, deblob-scripts-5.4, deblob-scripts-4.19, deblob-scripts-4.14, deblob-scripts-4.9, deblob-scripts-4.4): Set the gnu-revision. (linux-libre-headers-5.13, linux-libre-headers-5.10, linux-libre-headers-5.4, linux-libre-headers-4.19, linux-libre-headers-4.14, linux-libre-headers-4.9, linux-libre-headers-4.4): Likewise. (linux-libre-5.10, linux-libre-5.4, linux-libre-4.19, linux-libre-4.14, linux-libre-4.9, linux-libre-4.4, linux-libre-arm-generic, linux-libre-arm-generic-5.10, linux-libre-arm-generic-5.4, linux-libre-arm-generic-4.19, linux-libre-arm-generic-4.14, linux-libre-arm-omap2plus, linux-libre-arm-omap2plus-4.19, linux-libre-arm-omap2plus-4.14, linux-libre-arm64-generic, linux-libre-arm64-generic-5.10, linux-libre-arm64-generic-5.4, linux-libre-riscv64-generic, linux-libre-mips64el-fuloong2e, linux-libre-with-bpf): Likewise. (linux-libre-headers-5.4.20): Set the gnu-revision, taking care not to alter the derivation.
2021-09-06gnu: ocaml-ppxlib: Update to 0.23.0.Xinglu Chen
* gnu/packages/ocaml.scm (ocaml-ppxlib): Update to 0.23.0. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-09-06gnu: ocaml-ppx-variants-conv: Patch for building with ocaml-ppxlib.Xinglu Chen
The patch will make it build when building it with ocaml-ppxlib@0.23.0. * gnu/packages/patches/ocaml-ppx-variants-ppxlib-api-change.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/ocaml.scm (ocaml-ppx-variants-conv): Apply the patch. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-09-06gnu: ocamlformat: Update to 0.19.0.Xinglu Chen
* gnu/packages/ocaml.scm (ocamlformat): Update to 0.19.0. [propagated-inputs]: Add ocaml-odoc-parser. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-09-06gnu: ocaml-ppx-optcomp: Update to 0.14.3.Xinglu Chen
* gnu/packages/ocaml.scm (ocaml-ppx-optcomp): Update to 0.14.3. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-09-06gnu: ocaml-markup@0.8.0: Use 'ocaml-ounit', not 'ocaml-ounit2'.Ludovic Courtès
* gnu/packages/ocaml.scm (ocaml-markup0.8.0)[native-inputs]: New field.
2021-09-06swh: Add 'lookup-snapshot-branch'.Ludovic Courtès
* guix/swh.scm (<snapshot>)[id]: New field. (snapshot-url, lookup-snapshot-branch): New procedures.
2021-09-06swh: <revisions> accept null 'date' fields.Ludovic Courtès
* guix/swh.scm (maybe-null): New procedure. (<revision>)[date]: Use it.
2021-09-06swh: Export <snapshot> accessors.Ludovic Courtès
* guix/swh.scm: Export <snapshot> accessors.
2021-09-06gnu: emacs-xref: Update to 1.2.2.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-xref): Update to 1.2.2.
2021-09-06gnu: Add r-megadepth.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-megadepth): New variable.
2021-09-06gnu: Add megadepth.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (megadepth): New variable.
2021-09-06gnu: Add libdeflate.Ricardo Wurmus
* gnu/packages/compression.scm (libdeflate): New variable.
2021-09-06gnu: Add r-cmdfun.Ricardo Wurmus
* gnu/packages/cran.scm (r-cmdfun): New variable.
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